J3_8P8N_002

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

8P8N|1|A|A|817, 8P8N|1|A|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P8N_002 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.0709

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8P8N|1|A|U|814
8P8N|1|A|G|815
8P8N|1|A|A|816
8P8N|1|A|A|817
8P8N|1|A|C|818
8P8N|1|A|U|819
8P8N|1|A|A|820
*
8P8N|1|A|U|905
8P8N|1|A|A|906
8P8N|1|A|G|907
*
8P8N|1|A|C|923
8P8N|1|A|G|924
8P8N|1|A|A|925
8P8N|1|A|A|926

Current chains

Chain A

25S rRNA

Nearby chains

Chain JV

60S ribosomal protein L15-A

Chain LF

60S ribosomal protein L2-A

Chain RJ

60S ribosomal protein L37-A