J3_8P8N_004

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8P8N|1|A|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P8N_004 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0792

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8P8N|1|A|U|1479
8P8N|1|A|G|1480
8P8N|1|A|A|1481
8P8N|1|A|A|1482
8P8N|1|A|G|1483
8P8N|1|A|U|1484
8P8N|1|A|G|1485
*
8P8N|1|A|C|1857
8P8N|1|A|A|1858
8P8N|1|A|A|1859
*
8P8N|1|A|U|1871
8P8N|1|A|C|1872
8P8N|1|A|U|1873
8P8N|1|A|A|1874

Current chains

Chain A

25S rRNA

Nearby chains

Chain QQ

60S ribosomal protein L19-A

Chain RG

60S ribosomal protein L34-A