J3_8P8N_005
3D structure
- PDB id
- 8P8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8P8N|1|A|U|1840, 8P8N|1|A|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P8N_005 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.0887
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8P8N|1|A|G|1488
8P8N|1|A|A|1489
8P8N|1|A|A|1490
8P8N|1|A|A|1491
*
8P8N|1|A|U|1837
8P8N|1|A|G|1838
8P8N|1|A|A|1839
8P8N|1|A|U|1840
8P8N|1|A|A|1841
8P8N|1|A|A|1842
8P8N|1|A|C|1843
*
8P8N|1|A|G|1852
8P8N|1|A|U|1853
8P8N|1|A|C|1854
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein eL39
- Chain LD
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain RG
- 60S ribosomal protein L34-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: