J3_8P9A_010
3D structure
- PDB id
- 8P9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Methyllissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8P9A|1|1|A|1065, 8P9A|1|1|U|1094, 8P9A|1|1|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P9A_010 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.2325
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_09667.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8P9A|1|1|U|986
8P9A|1|1|U|987
*
8P9A|1|1|A|1062
8P9A|1|1|G|1063
8P9A|1|1|A|1064
8P9A|1|1|A|1065
8P9A|1|1|G|1066
*
8P9A|1|1|C|1092
8P9A|1|1|A|1093
8P9A|1|1|U|1094
8P9A|1|1|U|1095
8P9A|1|1|U|1096
8P9A|1|1|G|1097
8P9A|1|1|A|1098
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 60S ribosomal protein L21-A
- Chain AC
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L7-A
Coloring options: