J3_8P9A_033
3D structure
- PDB id
- 8P9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Methyllissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P9A_033 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.1015
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8P9A|1|A|C|1161
8P9A|1|A|C|1162
8P9A|1|A|A|1163
8P9A|1|A|G|1164
*
8P9A|1|A|C|1581
8P9A|1|A|U|1582
8P9A|1|A|A|1583
8P9A|1|A|G|1584
8P9A|1|A|U|1585
8P9A|1|A|A|1586
8P9A|1|A|A|1587
*
8P9A|1|A|U|1609
8P9A|1|A|G|1610
8P9A|1|A|A|1611
8P9A|1|A|U|1612
8P9A|1|A|U|1613
8P9A|1|A|A|1614
8P9A|1|A|C|1615
8P9A|1|A|G|1616
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S5
- Chain R
- 40S ribosomal protein S16-A
- Chain d
- 40S ribosomal protein S28-A
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