J3_8PEG_005

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8PEG|1|7|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PEG_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1109

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8PEG|1|7|C|1306
8PEG|1|7|A|1307
8PEG|1|7|A|1308
8PEG|1|7|G|1309
*
8PEG|1|7|C|1605
8PEG|1|7|C|1606
8PEG|1|7|C|1607
8PEG|1|7|A|1608
8PEG|1|7|A|1609
8PEG|1|7|A|1610
8PEG|1|7|C|1611
*
8PEG|1|7|G|1620
8PEG|1|7|U|1621
8PEG|1|7|G|1622

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L34