J3_8PEG_011

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8PEG|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PEG_011 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.095

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8PEG|1|A|C|826
8PEG|1|A|U|827
8PEG|1|A|U|828
8PEG|1|A|G|829
*
8PEG|1|A|C|857
8PEG|1|A|G|858
8PEG|1|A|G|859
8PEG|1|A|A|860
8PEG|1|A|G|861
*
8PEG|1|A|C|868
8PEG|1|A|G|869
8PEG|1|A|U|870
8PEG|1|A|U|871
8PEG|1|A|A|872
8PEG|1|A|A|873
8PEG|1|A|G|874

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain H

Small ribosomal subunit protein uS8

Chain U

30S ribosomal protein S21