J3_8PFR_002
3D structure
- PDB id
- 8PFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8PFR|1|A|A|817, 8PFR|1|A|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PFR_002 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0666
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8PFR|1|A|U|814
8PFR|1|A|G|815
8PFR|1|A|A|816
8PFR|1|A|A|817
8PFR|1|A|C|818
8PFR|1|A|U|819
8PFR|1|A|A|820
*
8PFR|1|A|U|905
8PFR|1|A|A|906
8PFR|1|A|G|907
*
8PFR|1|A|C|923
8PFR|1|A|G|924
8PFR|1|A|A|925
8PFR|1|A|A|926
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JV
- 60S ribosomal protein L15-A
- Chain LF
- 60S ribosomal protein L2-A
- Chain RJ
- 60S ribosomal protein L37-A
- Chain RN
- 60S ribosomal protein L39-like
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