J3_8PFR_008

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AGCU*ACGUUCUAGCAUUCAAG*UGAU

Length

25 nucleotides

Bulged bases

8PFR|1|A|G|2549, 8PFR|1|A|U|2550, 8PFR|1|A|U|2551, 8PFR|1|A|A|2554, 8PFR|1|A|U|2558, 8PFR|1|A|U|2559, 8PFR|1|A|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PFR_008 not in the Motif Atlas

Homologous match to J3_8P9A_060

Geometric discrepancy: 0.1681

The information below is about J3_8P9A_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76247.1

Basepair signature

cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8PFR|1|A|A|2529
8PFR|1|A|G|2530
8PFR|1|A|C|2531
8PFR|1|A|U|2532
*
8PFR|1|A|A|2547
8PFR|1|A|C|2548
8PFR|1|A|G|2549
8PFR|1|A|U|2550
8PFR|1|A|U|2551
8PFR|1|A|C|2552
8PFR|1|A|U|2553
8PFR|1|A|A|2554
8PFR|1|A|G|2555
8PFR|1|A|C|2556
8PFR|1|A|A|2557
8PFR|1|A|U|2558
8PFR|1|A|U|2559
8PFR|1|A|C|2560
8PFR|1|A|A|2561
8PFR|1|A|A|2562
8PFR|1|A|G|2563
*
8PFR|1|A|U|2578
8PFR|1|A|G|2579
8PFR|1|A|A|2580
8PFR|1|A|U|2581

Current chains

Chain A

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L2-A

Chain LL

60S ribosomal protein L8-A

Chain QX

60S ribosomal protein L25

Chain QZ

60S ribosomal protein L27-A

Chain RC

60S ribosomal protein L30

Chain RG

60S ribosomal protein L34-A

Chain RT

60S ribosomal protein L43-A