J3_8PFR_014
3D structure
- PDB id
- 8PFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 8PFR|1|A|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PFR_014 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.1019
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97456.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8PFR|1|A|C|185
8PFR|1|A|U|186
8PFR|1|A|A|187
8PFR|1|A|U|188
8PFR|1|A|G|189
*
8PFR|1|A|C|205
8PFR|1|A|G|206
8PFR|1|A|U|207
8PFR|1|A|C|208
8PFR|1|A|A|209
8PFR|1|A|U|210
8PFR|1|A|A|211
8PFR|1|A|G|212
8PFR|1|A|A|213
8PFR|1|A|G|214
*
8PFR|1|A|C|226
8PFR|1|A|G|227
8PFR|1|A|U|228
8PFR|1|A|G|229
8PFR|1|A|U|230
8PFR|1|A|G|231
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LD
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LH
- 60S ribosomal protein L4-A
- Chain QY
- 60S ribosomal protein L26-A
Coloring options: