J3_8PFR_020
3D structure
- PDB id
- 8PFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PFR_020 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.081
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8PFR|1|A|U|1526
8PFR|1|A|C|1527
8PFR|1|A|G|1528
8PFR|1|A|A|1529
8PFR|1|A|U|1530
8PFR|1|A|C|1531
*
8PFR|1|A|G|1591
8PFR|1|A|G|1592
8PFR|1|A|A|1593
8PFR|1|A|A|1594
8PFR|1|A|U|1595
*
8PFR|1|A|A|1612
8PFR|1|A|A|1613
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LD
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain QX
- 60S ribosomal protein L25
- Chain RG
- 60S ribosomal protein L34-A
- Chain RM
- 60S ribosomal protein L38
- Chain RN
- 60S ribosomal protein L39-like
Coloring options: