3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
8PHJ|1|A|U|871, 8PHJ|1|A|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PHJ_001 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0642
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

8PHJ|1|A|C|826
8PHJ|1|A|U|827
8PHJ|1|A|U|828
8PHJ|1|A|G|829
*
8PHJ|1|A|C|857
8PHJ|1|A|G|858
8PHJ|1|A|G|859
8PHJ|1|A|A|860
8PHJ|1|A|G|861
*
8PHJ|1|A|C|868
8PHJ|1|A|G|869
8PHJ|1|A|U|870
8PHJ|1|A|U|871
8PHJ|1|A|A|872
8PHJ|1|A|A|873
8PHJ|1|A|G|874

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
Small ribosomal subunit protein uS2
Chain H
Small ribosomal subunit protein uS8
Chain U
Small ribosomal subunit protein bS21

Coloring options:


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