3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PHJ_013 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.0604
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8PHJ|1|a|C|1298
8PHJ|1|a|G|1299
8PHJ|1|a|G|1300
8PHJ|1|a|A|1301
8PHJ|1|a|A|1302
8PHJ|1|a|G|1303
*
8PHJ|1|a|C|1625
8PHJ|1|a|A|1626
8PHJ|1|a|G|1627
*
8PHJ|1|a|C|1639
8PHJ|1|a|A|1640
8PHJ|1|a|A|1641
8PHJ|1|a|G|1642

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

No other chains within 10Å

Coloring options:


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