J3_8PHJ_014

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8PHJ|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PHJ_014 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.0944

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8PHJ|1|a|C|1306
8PHJ|1|a|A|1307
8PHJ|1|a|A|1308
8PHJ|1|a|G|1309
*
8PHJ|1|a|C|1605
8PHJ|1|a|C|1606
8PHJ|1|a|C|1607
8PHJ|1|a|A|1608
8PHJ|1|a|A|1609
8PHJ|1|a|A|1610
8PHJ|1|a|C|1611
*
8PHJ|1|a|G|1620
8PHJ|1|a|U|1621
8PHJ|1|a|G|1622

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 1

Large ribosomal subunit protein bL34