J3_8PHJ_035

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PHJ_035 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0729

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8PHJ|1|a|G|1424
8PHJ|1|a|G|1425
8PHJ|1|a|G|1426
8PHJ|1|a|A|1427
8PHJ|1|a|C|1428
8PHJ|1|a|G|1429
*
8PHJ|1|a|C|1564
8PHJ|1|a|C|1565
*
8PHJ|1|a|G|1568
8PHJ|1|a|A|1569
8PHJ|1|a|A|1570
8PHJ|1|a|A|1571
8PHJ|1|a|A|1572
8PHJ|1|a|G|1573
8PHJ|1|a|C|1574

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain c

Large ribosomal subunit protein uL2