J3_8PKL_020

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PKL_020 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0807

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8PKL|1|7|G|30
8PKL|1|7|C|31
*
8PKL|1|7|G|474
8PKL|1|7|C|475
8PKL|1|7|G|476
8PKL|1|7|A|477
8PKL|1|7|A|478
8PKL|1|7|A|479
8PKL|1|7|A|480
8PKL|1|7|G|481
*
8PKL|1|7|C|509
8PKL|1|7|C|510

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L20

Chain x

50S ribosomal protein L24