3D structure

PDB id
8PNN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Bromolissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUAUG*CGUCAUAGAG*CGUGUG
Length
21 nucleotides
Bulged bases
8PNN|1|AR|U|210
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PNN_043 not in the Motif Atlas
Homologous match to J3_8P9A_044
Geometric discrepancy: 0.0351
The information below is about J3_8P9A_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_75408.1
Basepair signature
cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
Number of instances in this motif group
2

Unit IDs

8PNN|1|AR|C|185
8PNN|1|AR|U|186
8PNN|1|AR|A|187
8PNN|1|AR|U|188
8PNN|1|AR|G|189
*
8PNN|1|AR|C|205
8PNN|1|AR|G|206
8PNN|1|AR|U|207
8PNN|1|AR|C|208
8PNN|1|AR|A|209
8PNN|1|AR|U|210
8PNN|1|AR|A|211
8PNN|1|AR|G|212
8PNN|1|AR|A|213
8PNN|1|AR|G|214
*
8PNN|1|AR|C|226
8PNN|1|AR|G|227
8PNN|1|AR|U|228
8PNN|1|AR|G|229
8PNN|1|AR|U|230
8PNN|1|AR|G|231

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain AT
5.8S ribosomal RNA; 5.8S rRNA
Chain CF
60S ribosomal protein L4-A
Chain DA
60S ribosomal protein L26-A

Coloring options:


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