J3_8PPK_004

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

8PPK|1|2|A|1679

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PPK_004 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1209

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8PPK|1|2|C|1218
8PPK|1|2|C|1219
8PPK|1|2|A|1220
8PPK|1|2|G|1221
*
8PPK|1|2|C|1645
8PPK|1|2|C|1646
8PPK|1|2|A|1647
8PPK|1|2|G|1648
8PPK|1|2|U|1649
8PPK|1|2|A|1650
8PPK|1|2|A|1651
*
8PPK|1|2|U|1673
8PPK|1|2|G|1674
8PPK|1|2|A|1675
8PPK|1|2|U|1676
8PPK|1|2|U|1677
8PPK|1|2|A2M|1678
8PPK|1|2|A|1679
8PPK|1|2|G|1680

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28