J3_8PPK_016
3D structure
- PDB id
- 8PPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUU(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 8PPK|1|2|G|991
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PPK_016 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.154
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8PPK|1|2|A|938
8PPK|1|2|U|939
8PPK|1|2|U|940
8PPK|1|2|C|941
*
8PPK|1|2|G|985
8PPK|1|2|G|986
8PPK|1|2|A|987
8PPK|1|2|C|988
8PPK|1|2|C|989
8PPK|1|2|A|990
8PPK|1|2|G|991
8PPK|1|2|A|992
8PPK|1|2|G|993
*
8PPK|1|2|C|1000
8PPK|1|2|A|1001
8PPK|1|2|U|1002
8PPK|1|2|U|1003
8PPK|1|2|PSU|1004
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S3a
- Chain N
- 40S ribosomal protein S13
- Chain O
- 40S ribosomal protein S14
- Chain a
- 40S ribosomal protein S26
Coloring options: