J3_8PPL_004
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- 8PPL|1|A2|A|1679
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PPL_004 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1163
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8PPL|1|A2|C|1218
8PPL|1|A2|C|1219
8PPL|1|A2|A|1220
8PPL|1|A2|G|1221
*
8PPL|1|A2|C|1645
8PPL|1|A2|C|1646
8PPL|1|A2|A|1647
8PPL|1|A2|G|1648
8PPL|1|A2|U|1649
8PPL|1|A2|A|1650
8PPL|1|A2|A|1651
*
8PPL|1|A2|U|1673
8PPL|1|A2|G|1674
8PPL|1|A2|A|1675
8PPL|1|A2|U|1676
8PPL|1|A2|U|1677
8PPL|1|A2|A2M|1678
8PPL|1|A2|A|1679
8PPL|1|A2|G|1680
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AF
- 40S ribosomal protein S5
- Chain AQ
- 40S ribosomal protein S16
- Chain Ac
- 40S ribosomal protein S28
- Chain Ir
- Eukaryotic translation initiation factor 2 subunit 1
Coloring options: