J3_8PPL_015
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUU(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 8PPL|1|A2|G|991
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PPL_015 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1579
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8PPL|1|A2|A|938
8PPL|1|A2|U|939
8PPL|1|A2|U|940
8PPL|1|A2|C|941
*
8PPL|1|A2|G|985
8PPL|1|A2|G|986
8PPL|1|A2|A|987
8PPL|1|A2|C|988
8PPL|1|A2|C|989
8PPL|1|A2|A|990
8PPL|1|A2|G|991
8PPL|1|A2|A|992
8PPL|1|A2|G|993
*
8PPL|1|A2|C|1000
8PPL|1|A2|A|1001
8PPL|1|A2|U|1002
8PPL|1|A2|U|1003
8PPL|1|A2|PSU|1004
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein S3a
- Chain AN
- 40S ribosomal protein S13
- Chain AO
- 40S ribosomal protein S14
- Chain Aa
- 40S ribosomal protein S26
- Chain Iy
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: