J3_8PV1_009
3D structure
- PDB id
- 8PV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- GGCU*AACUUCUGGAGUUAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8PV1|1|C1|U|2512, 8PV1|1|C1|G|2515, 8PV1|1|C1|U|2519, 8PV1|1|C1|U|2520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PV1_009 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.3082
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8PV1|1|C1|G|2492
8PV1|1|C1|G|2493
8PV1|1|C1|C|2494
8PV1|1|C1|U|2495
*
8PV1|1|C1|A|2508
8PV1|1|C1|A|2509
8PV1|1|C1|C|2510
8PV1|1|C1|U|2511
8PV1|1|C1|U|2512
8PV1|1|C1|C|2513
8PV1|1|C1|U|2514
8PV1|1|C1|G|2515
8PV1|1|C1|G|2516
8PV1|1|C1|A|2517
8PV1|1|C1|G|2518
8PV1|1|C1|U|2519
8PV1|1|C1|U|2520
8PV1|1|C1|A|2521
8PV1|1|C1|A|2522
8PV1|1|C1|G|2523
*
8PV1|1|C1|C|2537
8PV1|1|C1|G|2538
8PV1|1|C1|A|2539
8PV1|1|C1|C|2540
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Ce
- Ribosome biogenesis protein NOP53
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein l30-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lp
- 60S ribosomal protein L43-like protein
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