J3_8PV3_003

3D structure

PDB id

8PV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAACUA*UGG*CGAA

Length

14 nucleotides

Bulged bases

8PV3|1|C1|A|799, 8PV3|1|C1|G|906

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PV3_003 not in the Motif Atlas

Homologous match to J3_5TBW_004

Geometric discrepancy: 0.2226

The information below is about J3_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8PV3|1|C1|U|796
8PV3|1|C1|G|797
8PV3|1|C1|A|798
8PV3|1|C1|A|799
8PV3|1|C1|C|800
8PV3|1|C1|U|801
8PV3|1|C1|A|802
*
8PV3|1|C1|U|887
8PV3|1|C1|G|888
8PV3|1|C1|G|889
*
8PV3|1|C1|C|905
8PV3|1|C1|G|906
8PV3|1|C1|A|907
8PV3|1|C1|A|908

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain LN

Ribosomal protein L15

Chain Lj

Ribosomal protein L37