J3_8PVK_006
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 8PVK|1|C1|A|1465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PVK_006 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.0906
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
8PVK|1|C1|C|1462
8PVK|1|C1|G|1463
8PVK|1|C1|A|1464
8PVK|1|C1|A|1465
8PVK|1|C1|G|1466
8PVK|1|C1|U|1467
8PVK|1|C1|G|1468
*
8PVK|1|C1|C|1837
8PVK|1|C1|A|1838
8PVK|1|C1|A|1839
*
8PVK|1|C1|U|1851
8PVK|1|C1|C|1852
8PVK|1|C1|U|1853
8PVK|1|C1|G|1854
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LR
- Ribosomal protein L19
- Chain Lg
- Ribosomal protein l34-like protein
Coloring options: