J3_8PVL_007
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- GAAA*UCAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8PVL|1|C1|U|1820, 8PVL|1|C1|A|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PVL_007 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.0647
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PVL|1|C1|G|1471
8PVL|1|C1|A|1472
8PVL|1|C1|A|1473
8PVL|1|C1|A|1474
*
8PVL|1|C1|U|1817
8PVL|1|C1|C|1818
8PVL|1|C1|A|1819
8PVL|1|C1|U|1820
8PVL|1|C1|A|1821
8PVL|1|C1|A|1822
8PVL|1|C1|C|1823
*
8PVL|1|C1|G|1832
8PVL|1|C1|U|1833
8PVL|1|C1|C|1834
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
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