J3_8PVL_021
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CG*CAACU*GG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PVL_021 not in the Motif Atlas
- Homologous match to J3_8C3A_054
- Geometric discrepancy: 0.194
- The information below is about J3_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16991.1
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PVL|1|C1|C|1611
8PVL|1|C1|G|1612
*
8PVL|1|C1|C|1621
8PVL|1|C1|A|1622
8PVL|1|C1|A|1623
8PVL|1|C1|C|1624
8PVL|1|C1|U|1625
*
8PVL|1|C1|G|1790
8PVL|1|C1|G|1791
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CJ
- Pescadillo homolog
- Chain Ce
- Ribosome biogenesis protein NOP53
- Chain LZ
- 60S ribosomal protein L27
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lk
- 60S ribosomal protein L38-like protein
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