3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
8Q4F|1|A|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Q4F_001 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0991
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

8Q4F|1|A|C|826
8Q4F|1|A|U|827
8Q4F|1|A|U|828
8Q4F|1|A|G|829
*
8Q4F|1|A|C|857
8Q4F|1|A|G|858
8Q4F|1|A|G|859
8Q4F|1|A|A|860
8Q4F|1|A|G|861
*
8Q4F|1|A|C|868
8Q4F|1|A|G|869
8Q4F|1|A|U|870
8Q4F|1|A|U|871
8Q4F|1|A|A|872
8Q4F|1|A|A|873
8Q4F|1|A|G|874

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
Small ribosomal subunit protein uS2
Chain H
Small ribosomal subunit protein uS8
Chain U
Small ribosomal subunit protein bS21

Coloring options:


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