J3_8Q4F_010

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Q4F_010 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0995

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8Q4F|1|a|C|1298
8Q4F|1|a|G|1299
8Q4F|1|a|G|1300
8Q4F|1|a|A|1301
8Q4F|1|a|A|1302
8Q4F|1|a|G|1303
*
8Q4F|1|a|C|1625
8Q4F|1|a|A|1626
8Q4F|1|a|G|1627
*
8Q4F|1|a|C|1639
8Q4F|1|a|A|1640
8Q4F|1|a|A|1641
8Q4F|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains