J3_8Q4F_011

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8Q4F|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Q4F_011 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1384

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8Q4F|1|a|C|1306
8Q4F|1|a|A|1307
8Q4F|1|a|A|1308
8Q4F|1|a|G|1309
*
8Q4F|1|a|C|1605
8Q4F|1|a|C|1606
8Q4F|1|a|C|1607
8Q4F|1|a|A|1608
8Q4F|1|a|A|1609
8Q4F|1|a|A|1610
8Q4F|1|a|C|1611
*
8Q4F|1|a|G|1620
8Q4F|1|a|U|1621
8Q4F|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34