3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCCUAAC*GGGGAAUAU*AGC
Length
19 nucleotides
Bulged bases
8Q4F|1|A|C|48, 8Q4F|1|A|A|50, 8Q4F|1|A|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Q4F_018 not in the Motif Atlas
Homologous match to J3_5J7L_050
Geometric discrepancy: 0.1294
The information below is about J3_5J7L_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8Q4F|1|A|G|46
8Q4F|1|A|C|47
8Q4F|1|A|C|48
8Q4F|1|A|U|49
8Q4F|1|A|A|50
8Q4F|1|A|A|51
8Q4F|1|A|C|52
*
8Q4F|1|A|G|359
8Q4F|1|A|G|360
8Q4F|1|A|G|361
8Q4F|1|A|G|362
8Q4F|1|A|A|363
8Q4F|1|A|A|364
8Q4F|1|A|U|365
8Q4F|1|A|A|366
8Q4F|1|A|U|367
*
8Q4F|1|A|A|393
8Q4F|1|A|G|394
8Q4F|1|A|C|395

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
Small ribosomal subunit protein uS12
Chain P
Small ribosomal subunit protein bS16

Coloring options:


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