3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Q4F_029 not in the Motif Atlas
Homologous match to J3_5J7L_069
Geometric discrepancy: 0.1243
The information below is about J3_5J7L_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8Q4F|1|a|G|1424
8Q4F|1|a|G|1425
8Q4F|1|a|G|1426
8Q4F|1|a|A|1427
8Q4F|1|a|C|1428
8Q4F|1|a|G|1429
*
8Q4F|1|a|C|1564
8Q4F|1|a|C|1565
*
8Q4F|1|a|G|1568
8Q4F|1|a|A|1569
8Q4F|1|a|A|1570
8Q4F|1|a|A|1571
8Q4F|1|a|A|1572
8Q4F|1|a|G|1573
8Q4F|1|a|C|1574

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
Large ribosomal subunit protein uL2

Coloring options:


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