J3_8Q4F_032
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUC*GUAU*AUUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 8Q4F|1|a|A|2518, 8Q4F|1|a|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q4F_032 not in the Motif Atlas
- Geometric match to J3_4V9F_009
- Geometric discrepancy: 0.2846
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69441.1
- Basepair signature
- cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8Q4F|1|a|C|2517
8Q4F|1|a|A|2518
8Q4F|1|a|U|2519
8Q4F|1|a|C|2520
*
8Q4F|1|a|G|2545
8Q4F|1|a|U|2546
8Q4F|1|a|A|2547
8Q4F|1|a|U|2548
*
8Q4F|1|a|A|2560
8Q4F|1|a|U|2561
8Q4F|1|a|U|2562
8Q4F|1|a|U|2563
8Q4F|1|a|A|2564
8Q4F|1|a|A|2565
8Q4F|1|a|A|2566
8Q4F|1|a|G|2567
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: