J3_8Q5I_006
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GAAA*UCAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8Q5I|1|1|U|1836, 8Q5I|1|1|A|1837
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_006 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.0583
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8Q5I|1|1|G|1484
8Q5I|1|1|A|1485
8Q5I|1|1|A|1486
8Q5I|1|1|A|1487
*
8Q5I|1|1|U|1833
8Q5I|1|1|C|1834
8Q5I|1|1|A|1835
8Q5I|1|1|U|1836
8Q5I|1|1|A|1837
8Q5I|1|1|A|1838
8Q5I|1|1|C|1839
*
8Q5I|1|1|G|1848
8Q5I|1|1|U|1849
8Q5I|1|1|C|1850
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AH
- 60S ribosomal protein L34-B
- Chain AK
- 60S ribosomal protein L37-B
- Chain AM
- 60S ribosomal protein L39
Coloring options: