J3_8Q5I_019
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8Q5I|1|A|A|1202, 8Q5I|1|A|G|1431, 8Q5I|1|A|C|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_019 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.0841
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8Q5I|1|A|C|1200
8Q5I|1|A|C|1201
8Q5I|1|A|A|1202
8Q5I|1|A|G|1203
8Q5I|1|A|A|1204
8Q5I|1|A|C|1205
*
8Q5I|1|A|G|1248
8Q5I|1|A|G|1249
8Q5I|1|A|G|1250
8Q5I|1|A|U|1251
8Q5I|1|A|G|1252
*
8Q5I|1|A|U|1428
8Q5I|1|A|U|1429
8Q5I|1|A|A|1430
8Q5I|1|A|G|1431
8Q5I|1|A|A|1432
8Q5I|1|A|C|1433
8Q5I|1|A|G|1434
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain L
- 40S ribosomal protein S10-A
- Chain e
- 40S ribosomal protein S29A
Coloring options: