J3_8Q5I_022

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

8Q5I|1|A|U|1459, 8Q5I|1|A|G|1526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Q5I_022 not in the Motif Atlas

Homologous match to J3_8C3A_044

Geometric discrepancy: 0.0638

The information below is about J3_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.4

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F

Number of instances in this motif group

5

Unit IDs

8Q5I|1|A|C|1456
8Q5I|1|A|A|1457
8Q5I|1|A|C|1458
8Q5I|1|A|U|1459
8Q5I|1|A|G|1460
*
8Q5I|1|A|C|1520
8Q5I|1|A|G|1521
8Q5I|1|A|U|1522
8Q5I|1|A|G|1523
8Q5I|1|A|C|1524
8Q5I|1|A|U|1525
8Q5I|1|A|G|1526
8Q5I|1|A|G|1527
*
8Q5I|1|A|C|1558
8Q5I|1|A|G|1559
8Q5I|1|A|A|1560
8Q5I|1|A|G|1561

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein S7

Chain T

40S ribosomal protein S18-B

Chain U

40S ribosomal protein S19-A