J3_8Q5I_028
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- UC*GAGGACUGCG*CUAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8Q5I|1|1|U|605
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_028 not in the Motif Atlas
- Homologous match to J3_8C3A_050
- Geometric discrepancy: 0.0564
- The information below is about J3_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8Q5I|1|1|U|497
8Q5I|1|1|C|498
*
8Q5I|1|1|G|586
8Q5I|1|1|A|587
8Q5I|1|1|G|588
8Q5I|1|1|G|589
8Q5I|1|1|A|590
8Q5I|1|1|C|591
8Q5I|1|1|U|592
8Q5I|1|1|G|593
8Q5I|1|1|C|594
8Q5I|1|1|G|595
*
8Q5I|1|1|C|604
8Q5I|1|1|U|605
8Q5I|1|1|A|606
8Q5I|1|1|G|607
8Q5I|1|1|G|608
8Q5I|1|1|A|609
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L32
- Chain l
- 60S ribosomal protein L4-B
- Chain n
- 60S ribosomal protein L6
- Chain o
- 60S ribosomal protein L7-A
Coloring options: