J3_8Q5I_032

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Q5I_032 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.0696

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8Q5I|1|1|C|1627
8Q5I|1|1|A|1628
*
8Q5I|1|1|U|1637
8Q5I|1|1|A|1638
8Q5I|1|1|A|1639
8Q5I|1|1|C|1640
8Q5I|1|1|U|1641
*
8Q5I|1|1|A|1806
8Q5I|1|1|G|1807

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L27

Chain AH

60S ribosomal protein L34-B