J3_8QBT_009
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 8QBT|1|B|U|14, 8QBT|1|B|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QBT_009 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.227
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8QBT|1|B|G|10
8QBT|1|B|C|11
8QBT|1|B|C|12
8QBT|1|B|G|13
8QBT|1|B|U|14
8QBT|1|B|A|15
8QBT|1|B|G|16
*
8QBT|1|B|C|68
8QBT|1|B|G|69
8QBT|1|B|C|70
*
8QBT|1|B|G|106
8QBT|1|B|G|107
8QBT|1|B|A|108
8QBT|1|B|A|109
8QBT|1|B|C|110
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- Large ribosomal subunit protein uL18
- Chain V
- 50S ribosomal protein L25
- Chain W
- Large ribosomal subunit protein bL27
Coloring options: