J3_8QCQ_004

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QCQ_004 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1049

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8QCQ|1|A|C|1337
8QCQ|1|A|G|1338
8QCQ|1|A|A|1339
8QCQ|1|A|A|1340
8QCQ|1|A|U|1341
8QCQ|1|A|G|1342
*
8QCQ|1|A|C|1670
8QCQ|1|A|G|1671
8QCQ|1|A|A|1672
*
8QCQ|1|A|U|1684
8QCQ|1|A|A|1685
8QCQ|1|A|A|1686
8QCQ|1|A|G|1687

Current chains

Chain A

23S rRNA

Nearby chains