J3_8QCQ_005

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

8QCQ|1|A|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QCQ_005 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.109

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8QCQ|1|A|C|1344
8QCQ|1|A|U|1345
8QCQ|1|A|A|1346
8QCQ|1|A|A|1347
8QCQ|1|A|G|1348
*
8QCQ|1|A|C|1650
8QCQ|1|A|G|1651
8QCQ|1|A|C|1652
8QCQ|1|A|A|1653
8QCQ|1|A|A|1654
8QCQ|1|A|A|1655
8QCQ|1|A|C|1656
*
8QCQ|1|A|G|1665
8QCQ|1|A|U|1666
8QCQ|1|A|A|1667
8QCQ|1|A|G|1668

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34