J3_8QCQ_009

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAU*AGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QCQ_009 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.2026

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

8QCQ|1|A|C|2818
8QCQ|1|A|A|2819
8QCQ|1|A|U|2820
*
8QCQ|1|A|A|2831
8QCQ|1|A|G|2832
8QCQ|1|A|U|2833
8QCQ|1|A|A|2834
8QCQ|1|A|A|2835
8QCQ|1|A|G|2836
*
8QCQ|1|A|C|2914
8QCQ|1|A|G|2915
8QCQ|1|A|A|2916
8QCQ|1|A|G|2917
8QCQ|1|A|G|2918

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3