J3_8QCQ_017
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QCQ_017 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.076
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8QCQ|1|a|C|1073
8QCQ|1|a|G|1074
8QCQ|1|a|U|1075
8QCQ|1|a|C|1076
8QCQ|1|a|A|1077
8QCQ|1|a|G|1078
*
8QCQ|1|a|C|1117
8QCQ|1|a|G|1118
8QCQ|1|a|C|1119
8QCQ|1|a|A|1120
8QCQ|1|a|A|1121
8QCQ|1|a|C|1122
8QCQ|1|a|C|1123
*
8QCQ|1|a|G|1196
8QCQ|1|a|A|1197
8QCQ|1|a|U|1198
8QCQ|1|a|G|1199
8QCQ|1|a|A|1200
8QCQ|1|a|C|1201
8QCQ|1|a|G|1202
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain e
- 30S ribosomal protein S5
- Chain g
- Small ribosomal subunit protein uS7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
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