J3_8QCQ_024

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAAG*CGCCAUAGGA*UGUAG

Length

20 nucleotides

Bulged bases

8QCQ|1|A|U|365

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QCQ_024 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0972

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8QCQ|1|A|U|340
8QCQ|1|A|G|341
8QCQ|1|A|A|342
8QCQ|1|A|A|343
8QCQ|1|A|G|344
*
8QCQ|1|A|C|360
8QCQ|1|A|G|361
8QCQ|1|A|C|362
8QCQ|1|A|C|363
8QCQ|1|A|A|364
8QCQ|1|A|U|365
8QCQ|1|A|A|366
8QCQ|1|A|G|367
8QCQ|1|A|G|368
8QCQ|1|A|A|369
*
8QCQ|1|A|U|381
8QCQ|1|A|G|382
8QCQ|1|A|U|383
8QCQ|1|A|A|384
8QCQ|1|A|G|385

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24