J3_8QCQ_028
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GC*GGAAUCU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QCQ_028 not in the Motif Atlas
- Geometric match to J3_8C3A_082
- Geometric discrepancy: 0.2022
- The information below is about J3_8C3A_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.2
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QCQ|1|a|G|48
8QCQ|1|a|C|49
*
8QCQ|1|a|G|369
8QCQ|1|a|G|370
8QCQ|1|a|A|371
8QCQ|1|a|A|372
8QCQ|1|a|U|373
8QCQ|1|a|C|374
8QCQ|1|a|U|375
*
8QCQ|1|a|A|401
8QCQ|1|a|G|402
8QCQ|1|a|C|403
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
Coloring options: