J3_8QCQ_035

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QCQ_035 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.0769

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8QCQ|1|a|U|1083
8QCQ|1|a|G|1084
*
8QCQ|1|a|U|1093
8QCQ|1|a|G|1094
8QCQ|1|a|U|1095
8QCQ|1|a|U|1096
*
8QCQ|1|a|G|1109
8QCQ|1|a|C|1110
8QCQ|1|a|A|1111
8QCQ|1|a|A|1112

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5