J3_8QFD_005
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 8QFD|1|5|A|2388
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QFD_005 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.0776
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
8QFD|1|5|C|2385
8QFD|1|5|G|2386
8QFD|1|5|A|2387
8QFD|1|5|A|2388
8QFD|1|5|G|2389
8QFD|1|5|U|2390
8QFD|1|5|G|2391
*
8QFD|1|5|C|2797
8QFD|1|5|A|2798
8QFD|1|5|A|2799
*
8QFD|1|5|U|2811
8QFD|1|5|C|2812
8QFD|1|5|U|2813
8QFD|1|5|G|2814
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L34
Coloring options: