J3_8QFD_006
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8QFD|1|5|U|2780, 8QFD|1|5|A|2781
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QFD_006 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.0883
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8QFD|1|5|G|2394
8QFD|1|5|A|2395
8QFD|1|5|A|2396
8QFD|1|5|G|2397
*
8QFD|1|5|C|2777
8QFD|1|5|C|2778
8QFD|1|5|A|2779
8QFD|1|5|U|2780
8QFD|1|5|A|2781
8QFD|1|5|U|2782
8QFD|1|5|C|2783
*
8QFD|1|5|G|2792
8QFD|1|5|U|2793
8QFD|1|5|C|2794
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain g
- 60S ribosomal protein L34
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
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