J3_8QFD_017
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QFD_017 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.1495
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8QFD|1|5|U|2432
8QFD|1|5|C|2433
8QFD|1|5|G|2434
8QFD|1|5|G|2435
8QFD|1|5|U|2436
8QFD|1|5|C|2437
*
8QFD|1|5|G|2507
8QFD|1|5|G|2508
8QFD|1|5|A|2509
8QFD|1|5|G|2510
8QFD|1|5|U|2511
*
8QFD|1|5|A|2528
8QFD|1|5|A|2529
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- 60S ribosomal protein L23a
- Chain g
- 60S ribosomal protein L34
- Chain k
- 60S ribosomal protein L38
- Chain l
- 60S ribosomal protein L39
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