J3_8QFD_018
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UG*CGACC*GA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QFD_018 not in the Motif Atlas
- Homologous match to J3_8C3A_054
- Geometric discrepancy: 0.2615
- The information below is about J3_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16991.1
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8QFD|1|5|U|2567
8QFD|1|5|G|2568
*
8QFD|1|5|C|2577
8QFD|1|5|G|2578
8QFD|1|5|A|2579
8QFD|1|5|C|2580
8QFD|1|5|C|2581
*
8QFD|1|5|G|2748
8QFD|1|5|A|2749
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Z
- 60S ribosomal protein L27
- Chain g
- 60S ribosomal protein L34
Coloring options: