J3_8QOA_012

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8QOA|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QOA_012 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1205

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8QOA|1|a|C|1306
8QOA|1|a|A|1307
8QOA|1|a|A|1308
8QOA|1|a|G|1309
*
8QOA|1|a|C|1605
8QOA|1|a|C|1606
8QOA|1|a|C|1607
8QOA|1|a|A|1608
8QOA|1|a|A|1609
8QOA|1|a|A|1610
8QOA|1|a|C|1611
*
8QOA|1|a|G|1620
8QOA|1|a|U|1621
8QOA|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34